Article
Accurate quantification of copy-number aberrations and whole-genome duplications in multi-sample tumor sequencing data.
Nature communications - 2 Sept 2020
Zaccaria Simone, Raphael Benjamin J
Abstract excerpt
Copy-number aberrations (CNAs) and whole-genome duplications (WGDs) are frequent somatic mutations in cancer but their quantification from DNA sequencing of bulk tumor samples is challenging. Standard methods for CNA inference analyze tumor samples individually; however, DNA sequencing of multiple samples from a cancer patient has recently become more common. We introduce HATCHet (Holistic Allele-specific Tumor...
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