Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Sequence-dependent extrusion of a small DNA hairpin at the N4 virion RNA polymerase promoters.

Journal of molecular biology - 1 Jan 1998

Dai X, Kloster M, Rothman-Denes L B

Abstract excerpt

Bacteriophage N4 virion RNA polymerase promoters contain five to seven-base inverted repeats separated by three bases and centered at position -12 from the site of transcription initiation. We have previously shown that these inverted repeats extrude as hairpins at physiological superhelical densities in a Mg(II)-dependent manner. Mg(II)-dependent hairpin extrusion at promoters P1 and P2 displays quantitative...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Base Sequence
Share to Conserved Sequence
Share to DNA-Directed RNA Polymerases

Methodology Data sources Editorial policy Privacy Delete account & data About Contact Helena Bioinformatics

Share to DNA, Viral

Share to Mutation

Share to Nucleic Acid Conformation

Share to Promoter Regions, Genetic

Share to Repetitive Sequences, Nucleic Acid

Source

Identifiers

PMID: 9761672
DOI: 10.1006/jmbi.1998.2096

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence. Graph snapshot: 2026-09-29.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Sequence-dependent extrusion of a small DNA hairpin at the N4 virion RNA polymerase promoters.PMID 9761672Read ↗

Identification of bacteriophage N4 virion RNA polymerase-nucleic acid interactions in transcription complexes.Semantic proximity Read ↗

Open complex scrunching before nucleotide addition accounts for the unusual transcription start site of E. coli ribosomal RNA promoters.Semantic proximity Read ↗

An alternate mechanism of abortive release marked by the formation of very long abortive transcripts.Semantic proximity Read ↗

The intercalating beta-hairpin of T7 RNA polymerase plays a role in promoter DNA melting and in stabilizing the melted DNA for efficient RNA synthesis.Semantic proximity Read ↗

Biophysical analysis of influenza A virus RNA promoter at physiological temperatures.Semantic proximity Read ↗

Structural basis for -10 promoter element melting by environmentally induced sigma factors.Semantic proximity Read ↗

DNA sequence-specific recognition by a transcriptional regulator requires indirect readout of A-tracts.Semantic proximity Read ↗

Interplay between σ region 3.2 and secondary channel factors during promoter escape by bacterial RNA polymerase.Semantic proximity Read ↗

A mutant viral RNA promoter with an altered conformation retains efficient recognition by a viral RNA replicase through a solution-exposed adenine.Semantic proximity Read ↗

Mutations in the CRE pocket of bacterial RNA polymerase affect multiple steps of transcription.Semantic proximity Read ↗

Next generation sequencing-based parallel analysis of melting kinetics of 4096 variants of a bacterial promoter.Semantic proximity Read ↗

Cryptic prokaryotic promoters explain instability of recombinant neuronal sodium channels in bacteriaSemantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.