Article
Ancestry may confound genetic machine learning: Candidate-gene prediction of opioid use disorder as an example.
Drug and alcohol dependence - 1 Dec 2021
Hatoum Alexander S, Wendt Frank R, Galimberti Marco, Polimanti Renato, Neale Benjamin, Kranzler Henry R, Gelernter Joel, Edenberg Howard J, Agrawal Arpana
Abstract excerpt
BACKGROUND: Machine learning (ML) models are beginning to proliferate in psychiatry, however machine learning models in psychiatric genetics have not always accounted for ancestry. Using an empirical example of a proposed genetic test for OUD, and exploring a similar test for tobacco dependence and a simulated binary phenotype, we show that genetic prediction using ML is vulnerable to ancestral confounding....
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