Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

CCSI: a database providing chromatin-chromatin spatial interaction information.

Database : the journal of biological databases and curation - 1 Jan 2016

Xie Xiaowei, Ma Wenbin, Songyang Zhou, Luo Zhenhua, Huang Junfeng, Dai Zhiming, Xiong Yuanyan

Abstract excerpt

Distal regulatory elements have been shown to regulate gene transcription through spatial interactions, and single nucleotide polymorphisms (SNPs) are linked with distal gene expression by spatial proximity, which helps to explain the causal role of disease-associated SNPs in non-coding region. Therefore, studies on spatial interactions between chromatin have created a new avenue for elucidating the mechanism of...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Databases, Nucleic Acid
Share to Databases, Protein

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Disease

Share to False Positive Reactions

Share to Internet

Share to Protein Interaction Mapping

Share to Regulatory Sequences, Nucleic Acid

Share to Schizosaccharomyces

Source

Open in PubMed Open full text

Identifiers

PMID: 26868054
DOI: 10.1093/database/bav124
PMCID: PMC4750547

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

CCSI: a database providing chromatin-chromatin spatial interaction information.PMID 26868054Read ↗

Discover novel disease-associated genes based on regulatory networks of long-range chromatin interactions.Semantic proximity Read ↗

Promoter-Enhancer Interactions Identified from Hi-C Data using Probabilistic Models and Hierarchical Topological DomainsSemantic proximity Read ↗

Intra- and inter-chromosomal chromatin interactions mediate genetic effects on regulatory networksSemantic proximity Read ↗

High resolution discovery of chromatin interactionsSemantic proximity Read ↗

Leveraging three-dimensional chromatin architecture for effective reconstruction of enhancer-target gene regulatory networkSemantic proximity Read ↗

Exploring the Effects of Genetic Variation on Gene Regulation in Cancer in the Context of 3D Genome StructureSemantic proximity Read ↗

Associating disease-related genetic variants in intergenic regions to the genes they impactSemantic proximity Read ↗

Exploring the effects of genetic variation on gene regulation in cancer in the context of 3D genome structureSemantic proximity Read ↗

HemaCisDB: An Interactive Database for Analyzing Cis-Regulatory Elements Across Hematopoietic MalignanciesSemantic proximity Read ↗

Graph-based data integration predicts long-range regulatory interactions across the human genomeSemantic proximity Read ↗

GWAS3D: Detecting human regulatory variants by integrative analysis of genome-wide associations, chromosome interactions and histone modifications.Semantic proximity Read ↗

The 3D Genome Browser: a web-based browser for visualizing 3D genome organization and long-range chromatin interactions.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.