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Article

The 3D Genome Browser: a web-based browser for visualizing 3D genome organization and long-range chromatin interactions.

Genome biology - 4 Oct 2018

Wang Yanli, Song Fan, Zhang Bo, Zhang Lijun, Xu Jie, Kuang Da, Li Daofeng, Choudhary Mayank N K, Li Yun, Hu Ming, Hardison Ross, Wang Ting, Yue Feng

Abstract excerpt

Here, we introduce the 3D Genome Browser, http://3dgenome.org , which allows users to conveniently explore both their own and over 300 publicly available chromatin interaction data of different types. We design a new binary data format for Hi-C data that reduces the file size by at least a magnitude and allows users to visualize chromatin interactions over millions of base pairs within seconds. Our browser...

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Identifiers

PMID: 30286773
DOI: 10.1186/s13059-018-1519-9
PMCID: PMC6172833

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 6 Sept 2026. Manifest publication-graph-cohort-2026-09-06.1.

Source receipt: pubmed, retrieved 6 Sept 2026.

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