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Article

Endogenous targets of RNA-directed DNA methylation and Pol IV in Arabidopsis.

The EMBO journal - 21 Jun 2006

Huettel Bruno, Kanno Tatsuo, Daxinger Lucia, Aufsatz Werner, Matzke Antonius J M, Matzke Marjori

Abstract excerpt

DRD1 is a SWI/SNF-like protein that cooperates with a plant-specific RNA polymerase, Pol IVb, to facilitate RNA-directed de novo methylation and silencing of homologous DNA. Screens to identify endogenous targets of this pathway in Arabidopsis revealed intergenic regions and plant genes located primarily in euchromatin. Many putative targets are near retrotransposon LTRs or other intergenic sequences that encode...

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Source

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Identifiers

PMID: 16724114
DOI: 10.1038/sj.emboj.7601150
PMCID: PMC1500864

Genes

DRD1

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

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Endogenous targets of RNA-directed DNA methylation and Pol IV in Arabidopsis.PMID 16724114Read ↗

RNA-directed DNA methylation mediated by DRD1 and Pol IVb: a versatile pathway for transcriptional gene silencing in plants.Semantic proximity Read ↗

A conserved transcriptional regulator is required for RNA-directed DNA methylation and plant development.Semantic proximity Read ↗

RNA-directed DNA methylation and plant development require an IWR1-type transcription factor.Semantic proximity Read ↗

NRPD4, a protein related to the RPB4 subunit of RNA polymerase II, is a component of RNA polymerases IV and V and is required for RNA-directed DNA methylation.Semantic proximity Read ↗

DTF1 is a core component of RNA-directed DNA methylation and may assist in the recruitment of Pol IV.Semantic proximity Read ↗

DDR complex facilitates global association of RNA polymerase V to promoters and evolutionarily young transposons.Semantic proximity Read ↗

An RNA polymerase II- and AGO4-associated protein acts in RNA-directed DNA methylation.Semantic proximity Read ↗

SHH1, a homeodomain protein required for DNA methylation, as well as RDR2, RDM4, and chromatin remodeling factors, associate with RNA polymerase IV.Semantic proximity Read ↗

Atypical RNA polymerase subunits required for RNA-directed DNA methylation.Semantic proximity Read ↗

Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1.Semantic proximity Read ↗

RNAi, DRD1, and histone methylation actively target developmentally important non-CG DNA methylation in arabidopsis.Semantic proximity Read ↗

Identification of genes required for de novo DNA methylation in Arabidopsis.Semantic proximity Read ↗

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