Article

MethylStar: A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing data

2019-12-21

Abstract excerpt

<h4>Background:</h4> Whole-Genome Bisulfite Sequencing (WGBS) is a Next Generation Sequencing (NGS) technique for measuring DNA methylation at base resolution. Continuing drops in sequencing costs are beginning to enable high-throughput surveys of DNA methylation in large samples of individuals and/or single cells. These surveys can easily generate hundreds or even thousands of WGBS datasets in a single study. Th...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: d97eb560-23ec-50a8-9ba2-18989a913168
DOI: 10.1101/2019.12.20.884536

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

MethylStar: A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing dataDOI 10.1101/2019.12.20.884536Read

NGSmethDB: an updated genome resource for high quality, single-cytosine resolution methylomes.Semantic proximity Read

MethGo: a comprehensive tool for analyzing whole-genome bisulfite sequencing data.Semantic proximity Read

SINBAD: a flexible tool for single cell DNA methylation dataSemantic proximity Read

wgbstools: A computational suite for DNA methylation sequencing data representation, visualization, and analysisSemantic proximity Read

Pash 3.0: A versatile software package for read mapping and integrative analysis of genomic and epigenomic variation using massively parallel DNA sequencing.Semantic proximity Read

Performance comparison and in-silico harmonization of commercial platforms for DNA methylome analysis by targeted bisulfite sequencingSemantic proximity Read

A new parallel pipeline for DNA methylation analysis of long reads datasets.Semantic proximity Read

Performance comparison and in-silico harmonisation of commercial platforms for DNA methylome analysis by targeted bisulfite sequencingSemantic proximity Read

SMAP: a streamlined methylation analysis pipeline for bisulfite sequencing.Semantic proximity Read

ModSeqR: An R package for efficient analysis of modified nucleotide dataSemantic proximity Read

A streamlined workflow for long-read DNA methylation analysis with NanoMethViz and BioconductorSemantic proximity Read

MethPanel: a parallel pipeline and interactive analysis tool for multiplex bisulphite PCR sequencing to assess DNA methylation biomarker panels for disease detectionSemantic proximity Read