Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

A new parallel pipeline for DNA methylation analysis of long reads datasets.

BMC bioinformatics - 9 Mar 2017

Olanda Ricardo, Pérez Mariano, Orduña Juan M, Tárraga Joaquín, Dopazo Joaquín

Abstract excerpt

BACKGROUND: DNA methylation is an important mechanism of epigenetic regulation in development and disease. New generation sequencers allow genome-wide measurements of the methylation status by reading short stretches of the DNA sequence (Methyl-seq). Several software tools for methylation analysis have been proposed over recent years. However, the current trend is that the new sequencers and the ones expected for...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Databases, Genetic
Share to DNA Methylation
Share to Epigenesis, Genetic

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Gene Expression Regulation

Share to Genome, Human

Share to Sensitivity and Specificity

Share to Sequence Alignment

Share to Software

Source

Open in PubMed Open full text

Identifiers

PMID: 28274198
DOI: 10.1186/s12859-017-1574-3
PMCID: PMC5343294

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 4 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

A new parallel pipeline for DNA methylation analysis of long reads datasets.PMID 28274198Read ↗

A parallel and sensitive software tool for methylation analysis on multicore platforms.Semantic proximity Read ↗

SMAP: a streamlined methylation analysis pipeline for bisulfite sequencing.Semantic proximity Read ↗

MethylStar: A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing dataSemantic proximity Read ↗

Pash 3.0: A versatile software package for read mapping and integrative analysis of genomic and epigenomic variation using massively parallel DNA sequencing.Semantic proximity Read ↗

NGSmethDB: an updated genome resource for high quality, single-cytosine resolution methylomes.Semantic proximity Read ↗

DNA methylation calling tools for Oxford Nanopore sequencing: a survey and human epigenome-wide evaluationSemantic proximity Read ↗

Whole human genome 5’-mC methylation analysis using long read nanopore sequencingSemantic proximity Read ↗

A streamlined workflow for long-read DNA methylation analysis with NanoMethViz and BioconductorSemantic proximity Read ↗

Pipeline Olympics: continuable benchmarking of computational workflows for DNA methylation sequencing data against an experimental gold standardSemantic proximity Read ↗

ModSeqR: An R package for efficient analysis of modified nucleotide dataSemantic proximity Read ↗

Phasing DNA Methylation.Semantic proximity Read ↗

Discovering methylated DNA motifs in bacterial nanopore sequencing data with MIJAMPSemantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.