Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Pash 3.0: A versatile software package for read mapping and integrative analysis of genomic and epigenomic variation using massively parallel DNA sequencing.

BMC bioinformatics - 23 Nov 2010

Coarfa Cristian, Yu Fuli, Miller Christopher A, Chen Zuozhou, Harris R Alan, Milosavljevic Aleksandar

Abstract excerpt

BACKGROUND: Massively parallel sequencing readouts of epigenomic assays are enabling integrative genome-wide analyses of genomic and epigenomic variation. Pash 3.0 performs sequence comparison and read mapping and can be employed as a module within diverse configurable analysis pipelines, includi...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Base Sequence
Share to Databases, Genetic
Share to DNA

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Epigenomics

Share to Genetic Variation

Share to Genome

Share to Sequence Analysis, DNA

Share to Software

Source

Open in PubMed Open full text

Identifiers

PMID: 21092284
DOI: 10.1186/1471-2105-11-572
PMCID: PMC3001746

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 2 Sept 2026. Prepared record publication-21092284-2026-09-02.2. Manifest publication-graph-cohort-2026-09-02.2.

Source receipt: PubMed via Helena Literature Corpus, retrieved 2 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Pash 3.0: A versatile software package for read mapping and integrative analysis of genomic and epigenomic variation using massively parallel DNA sequencing.PMID 21092284Read ↗

MethGo: a comprehensive tool for analyzing whole-genome bisulfite sequencing data.Semantic proximity Read ↗

MethylStar: A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing dataSemantic proximity Read ↗

Umap and Bismap: quantifying genome and methylome mappabilitySemantic proximity Read ↗

A new approach to decode DNA methylome and genomic variants simultaneously from double strand bisulfite sequencing.Semantic proximity Read ↗

Fast and SNP-tolerant detection of complex variants and splicing in short reads.Semantic proximity Read ↗

SMAP: a streamlined methylation analysis pipeline for bisulfite sequencing.Semantic proximity Read ↗

ModSeqR: An R package for efficient analysis of modified nucleotide dataSemantic proximity Read ↗

A streamlined workflow for long-read DNA methylation analysis with NanoMethViz and BioconductorSemantic proximity Read ↗

CGmapTools improves the precision of heterozygous SNV calls and supports allele-specific methylation detection and visualization in bisulfite-sequencing data.Semantic proximity Read ↗

A new parallel pipeline for DNA methylation analysis of long reads datasets.Semantic proximity Read ↗

NGSmethDB: an updated genome resource for high quality, single-cytosine resolution methylomes.Semantic proximity Read ↗

SINBAD: a flexible tool for single cell DNA methylation dataSemantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.