Article

HisTrader: A Tool to Identify Nucleosome Free Regions from ChIP-Seq of Histone Post-Translational Modifications

2020-03-12

Abstract excerpt

<h4>ABSTRACT</h4> <h4>Motivation</h4> Chromatin immuno-precipitation sequencing (ChIP-Seq) of histone post-translational modifications coupled with de novo motif elucidation and enrichment analyses can identify transcription factors responsible for orchestrating transitions between cell-and disease-states. However, the identified regulatory elements can span several kilobases (kb) in length, which complicates m...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: c39f41fb-2911-5eac-ad4c-fc92836bff0a
DOI: 10.1101/2020.03.12.989228

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

HisTrader: A Tool to Identify Nucleosome Free Regions from ChIP-Seq of Histone Post-Translational ModificationsDOI 10.1101/2020.03.12.989228Read

A map of direct TF-DNA interactions in the human genomeSemantic proximity Read

Dissecting the regulatory activity and sequence content of loci with exceptional numbers of transcription factor associationsSemantic proximity Read

HemaCisDB: An Interactive Database for Analyzing Cis-Regulatory Elements Across Hematopoietic MalignanciesSemantic proximity Read

Deciphering principles of nucleosome interactions and impact of cancer-associated mutations from comprehensive interaction network analysis.Semantic proximity Read

Factorbook: an Updated Catalog of Transcription Factor Motifs and Candidate Regulatory Motif SitesSemantic proximity Read

Integrative analysis of transcription factor occupancy at enhancers and disease risk loci in noncoding genomic regionsSemantic proximity Read

Dissecting the regulatory activity and sequence content of loci with exceptional numbers of transcription factor associations.Semantic proximity Read

Codebook: sequence specificity and genomic binding of poorly-characterized human transcription factorsSemantic proximity Read

An expansive human regulatory lexicon encoded in transcription factor footprints.Semantic proximity Read

Overlapping binding sites underlie TF genomic occupancySemantic proximity Read

ChIPbinner: An R package for analyzing broad histone marks binned in uniform windows from ChIP-Seq or CUT&RUN/TAG dataSemantic proximity Read

maxATAC: genome-scale transcription-factor binding prediction from ATAC-seq with deep neural networksSemantic proximity Read