Article
Annotating genetic variants to target genes using H-MAGMA.
Nature protocols - 1 Jan 2023
Sey Nancy Y A, Pratt Brandon M, Won Hyejung
Abstract excerpt
An outstanding goal in modern genomics is to systematically predict the functional outcome of noncoding variation associated with complex traits. To address this, we developed Hi-C-coupled multi-marker analysis of genomic annotation (H-MAGMA), which builds on traditional MAGMA-a gene-based analysis tool that assigns variants to their target genes-by incorporating 3D chromatin configuration in assigning variants...
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