Article
Accurate imputation of human leukocyte antigens with CookHLA.
Nature communications - 24 Feb 2021
Cook Seungho, Choi Wanson, Lim Hyunjoon, Luo Yang, Kim Kunhee, Jia Xiaoming, Raychaudhuri Soumya, Han Buhm
Abstract excerpt
The recent development of imputation methods enabled the prediction of human leukocyte antigen (HLA) alleles from intergenic SNP data, allowing studies to fine-map HLA for immune phenotypes. Here we report an accurate HLA imputation method, CookHLA, which has superior imputation accuracy compared to previous methods. CookHLA differs from other approaches in that it locally embeds prediction markers into highly...
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