Article
Making the Most of Clumping and Thresholding for Polygenic Scores.
American journal of human genetics - 5 Dec 2019
Privé Florian, Vilhjálmsson Bjarni J, Aschard Hugues, Blum Michael G B
Abstract excerpt
Polygenic prediction has the potential to contribute to precision medicine. Clumping and thresholding (C+T) is a widely used method to derive polygenic scores. When using C+T, several p value thresholds are tested to maximize predictive ability of the derived polygenic scores. Along with this p value threshold, we propose to tune three other hyper-parameters for C+T. We implement an efficient way to derive...
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