Back to search

Article

GITAR: an Open Source Tool for Analysis and Visualization of Hi-C Data

2018-02-04

Abstract excerpt

Interactions between chromatin segments play a large role in functional genomic assays and developments in genomic interaction detection methods have shown interacting topological domains within the genome. Among these methods, Hi-C plays a key role. Here, we present GITAR (Genome Interaction Tools and Resources), a software to perform a comprehensive Hi-C data analysis, including data preprocessing, normalization...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work
4c66bfe2-3e47-5229-8cc5-a95be25a6a1e
DOI
10.1101/259515
Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest
Interactive article relationship graphSelect a related publication card to move it into the centre and load its closest explainable connections. Solid lines are source-backed structured connections. Dashed lines are semantic discovery signals and are not scientific evidence.
GITAR: an Open Source Tool for Analysis and Visualization of Hi-C DataDOI 10.1101/259515
3DIV: A 3D-genome Interaction Viewer and database.Semantic proximity
The 3D Genome Browser: a web-based browser for visualizing 3D genome organization and long-range chromatin interactions.Semantic proximity
A comprehensive catalog of 3D genome organization in diverse human genomes facilitates understanding of the impact of structural variation on chromatin structureSemantic proximity
HiCLift: A fast and efficient tool for converting chromatin interaction data between genome assembliesSemantic proximity
From 2D to 4D: a Containerized Workflow and Browser to Explore Dynamic Chromatin ArchitectureSemantic proximity
DiffGR: Detecting Differentially Interacting Genomic Regions from Hi-C Contact MapsSemantic proximity
Mustache: Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space RepresentationSemantic proximity
CHiCAGO: robust detection of DNA looping interactions in Capture Hi-C data.Semantic proximity
Comparison of the 3D organization of sperm and fibroblast genomes using the Hi-C approachSemantic proximity
Genome wide clustering on integrated chromatin states and Micro-C contacts reveals chromatin interaction signaturesSemantic proximity
VECTOR: A Framework to Identify and Quantify Structural Changes in Chromatin using Hi-C DataSemantic proximity
HIPPIE2: a method for fine-scale identification of physically interacting chromatin regionsSemantic proximity
Select a neighboring publication to make it the new centre.