TagSNP transferability and relative loss of variability prediction from HapMap to an admixed population.

doi:10.1186/1423-0127-16-73

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Back to search

Article

TagSNP transferability and relative loss of variability prediction from HapMap to an admixed population.

Journal of biomedical science - 14 Aug 2009

Lins Tulio C, Abreu Breno S, Pereira Rinaldo W

Abstract excerpt

BACKGROUND: The application of a subset of single nucleotide polymorphisms, the tagSNPs, can be useful in capturing untyped SNPs information in a genomic region. TagSNP transferability from the HapMap dataset to admixed populations is of uncertain value due population structure, admixture, drift and recombination effects. In this work an empirical dataset from a Brazilian admixed sample was evaluated against the...

Topics

Africa
Algorithms
Brazil
Cholesterol Ester Transfer Proteins
Chromosome Mapping
Ethnicity
Europe
Asia, Eastern
Genetic Variation
Genotype
Haplotypes
Humans

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Hydroxymethylglutaryl CoA Reductases

Linkage Disequilibrium

Marriage

Metagenomics

Polymorphism, Single Nucleotide

Protein Tyrosine Phosphatase, Non-Receptor Type 22

Source

Open in PubMed Open full text

Identifiers

PMID: 19682379
DOI: 10.1186/1423-0127-16-73
PMCID: PMC2737315

Genes

VDR
CETP
HMGCR
PTPN22

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 29 Aug 2026. Prepared record publication-19682379-2026-08-29.1. Manifest publication-graph-cohort-2026-08-29.1.

Source receipt: PubMed via Helena Literature Corpus, retrieved 29 Aug 2026.

Community interpretation

Discuss the evidence

Ask a question, add context or challenge an interpretation. Community activity is separate from scientific evidence strength.

discussions

replies

Citations encouraged

Claims remain attributable.

No discussion yet

Be the first to add a careful, cited interpretation.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

TagSNP transferability and relative loss of variability prediction from HapMap to an admixed population.PMID 19682379Read ↗

HapMap tagSNP transferability in multiple populations: general guidelines.Semantic proximity Read ↗

On transferability of genome-wide tagSNPs.Semantic proximity Read ↗

The whole genome tagSNP selection and transferability among HapMap populations.Semantic proximity Read ↗

The portability of tagSNPs across populations: a worldwide survey.Semantic proximity Read ↗

Transferability of tag SNPs to capture common genetic variation in DNA repair genes across multiple populations.Semantic proximity Read ↗

Portability of tag SNPs across isolated population groups: an example from India.Semantic proximity Read ↗

Transferability of tag SNPs in genetic association studies in multiple populations.Semantic proximity Read ↗

Population-specific reference panels are crucial for genetic analyses: an example of the CREBRF locus in Native Hawaiians.Semantic proximity Read ↗

Evaluation of the SNP tagging approach in an independent population sample--array-based SNP discovery in Sami.Semantic proximity Read ↗

Linkage disequilibrium patterns and tagSNP transferability among European populations.Semantic proximity Read ↗

Haplotype reconstruction error as a classical misclassification problem: introducing sensitivity and specificity as error measures.Semantic proximity Read ↗

Reconstituting the frequency spectrum of ascertained single-nucleotide polymorphism data.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.