Article

HiTea: a computational pipeline to identify non-reference transposable element insertions in Hi-C data

2020-04-28

Abstract excerpt

Hi-C is a common technique for assessing three-dimensional chromatin conformation. Recent studies have shown that long-range interaction information in Hi-C data can be used to generate chromosome-length genome assemblies and identify large-scale structural variations. Here, we demonstrate the use of Hi-C data in detecting mobile transposable element (TE) insertions genome-wide. Our pipeline HiTea ( Hi -C based...

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Literature Corpus work: e20fcf43-f979-5491-9bda-67fb7b95a355
DOI: 10.1101/2020.04.27.060145

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