Article

Transmission trees on a known pathogen phylogeny: enumeration and sampling

2017-07-08

Abstract excerpt

One approach to the reconstruction of infectious disease transmission trees from pathogen genomic data has been to use a phylogenetic tree, reconstructed from pathogen sequences, and annotate its internal nodes to provide a reconstruction of which host each lineage was in at each point in time. If only one pathogen lineage can be transmitted to a new host (i.e. the transmission bottleneck is complete), this corres...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: dbd9cc87-cf4a-536e-aa83-e09587ee91f5
DOI: 10.1101/160812

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

Transmission trees on a known pathogen phylogeny: enumeration and samplingDOI 10.1101/160812Read

Inference of infectious disease transmission using multiple genomes per hostSemantic proximity Read

Relating phylogenetic trees to transmission trees of infectious disease outbreaks.Semantic proximity Read

Using genomics data to reconstruct transmission trees during disease outbreaks.Semantic proximity Read

Integrating Transmission Dynamics and Pathogen Evolution Through a Bayesian ApproachSemantic proximity Read

SharpTNI: Counting and Sampling Parsimonious Transmission Networks under a Weak BottleneckSemantic proximity Read

Epidemiological inference from pathogen genomes: A review of phylodynamic models and applicationsSemantic proximity Read

Within-host bacterial diversity hinders accurate reconstruction of transmission networks from genomic distance data.Semantic proximity Read

Bayesian inference of infectious disease transmission from whole genome sequence dataSemantic proximity Read

Genomic infectious disease epidemiology in partially sampled and ongoing outbreaksSemantic proximity Read

Bayesian Inference of Pathogen Phylogeography using the Structured Coalescent ModelSemantic proximity Read

Developing methodologies and software for Bayesian inference of transmission trees from epidemiological and genetic dataSemantic proximity Read

Simultaneous inference of phylogenetic and transmission trees in infectious disease outbreaks.Semantic proximity Read