Article

Bayesian Inference of Pathogen Phylogeography using the Structured Coalescent Model

2024-10-17

Abstract excerpt

<h4>ABSTRACT</h4> Over the past decade, pathogen genome sequencing has become well established as a powerful approach to study infectious disease epidemiology. In particular, when multiple genomes are available from several geographical locations, comparing them is informative about the relative size of the local pathogen populations as well as past migration rates and events between locations. The structured coa...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 18e89623-8c44-55bd-b14a-2bd9c5f3d3a2
DOI: 10.1101/2024.10.14.617553

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

Bayesian Inference of Pathogen Phylogeography using the Structured Coalescent ModelDOI 10.1101/2024.10.14.617553Read

Phylodynamic Inference for Structured Epidemiological ModelsSemantic proximity Read

Inferring time-dependent migration and coalescence patterns from genetic sequence and predictor data in structured populationsSemantic proximity Read

The Structured Coalescent and its ApproximationsSemantic proximity Read

Distinguishing imported cases from locally acquired cases within a geographically limited genomic sample of an infectious diseaseSemantic proximity Read

Approaches and challenges to inferring the geographical source of infectious disease outbreaks using genomic dataSemantic proximity Read

Estimating disease spread using structured coalescent and birth-death models: A quantitative comparisonSemantic proximity Read

Developing methodologies and software for Bayesian inference of transmission trees from epidemiological and genetic dataSemantic proximity Read

Epidemiological inference from pathogen genomes: A review of phylodynamic models and applicationsSemantic proximity Read

Bayesian inference of infectious disease transmission from whole genome sequence dataSemantic proximity Read

Epidemiological inference for emerging viruses using segregating sitesSemantic proximity Read

New Routes to Phylogeography: A Bayesian Structured Coalescent Approximation.Semantic proximity Read

Infectious Disease Dynamics Inferred from Genetic Data via Sequential Monte CarloSemantic proximity Read