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Article

Simultaneous inference of phylogenetic and transmission trees in infectious disease outbreaks.

PLoS computational biology - 1 May 2017

Klinkenberg Don, Backer Jantien A, Didelot Xavier, Colijn Caroline, Wallinga Jacco

Abstract excerpt

Whole-genome sequencing of pathogens from host samples becomes more and more routine during infectious disease outbreaks. These data provide information on possible transmission events which can be used for further epidemiologic analyses, such as identification of risk factors for infectivity and transmission. However, the relationship between transmission events and sequence data is obscured by uncertainty...

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Identifiers

PMID: 28545083
DOI: 10.1371/journal.pcbi.1005495
PMCID: PMC5436636

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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