Article

JUNIPER: Reconstructing Transmission Events from Next-Generation Sequencing Data at Scale

2025-03-27

Abstract excerpt

<title>Abstract</title> <p>Transmission reconstruction––the inference of who infects whom in disease outbreaks––offers critical insights into how pathogens spread and provides opportunities for targeted control measures. We developed JUNIPER (Joint Underlying Network Inference for Phylogenetic and Epidemiological Reconstructions), a highly-scalable pathogen outbreak reconstruction tool that incorporates intrahost...

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Literature Corpus work: ba2251b3-4fea-5612-b6ce-2562db01c275
DOI: 10.21203/rs.3.rs-6264999/v1

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