Article

JUNIPER: Reconstructing Transmission Events from Next-Generation Sequencing Data at Scale

2025-03-05

Abstract excerpt

Transmission reconstruction--the inference of who infects whom in disease outbreaks--offers critical insights into how pathogens spread and provides opportunities for targeted control measures. We developed JUNIPER (Joint Underlying Network Inference for Phylogenetic and Epidemiological Reconstructions), a highly-scalable pathogen outbreak reconstruction tool that incorporates intrahost variation, incomplete sampl...

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Literature Corpus work: 84a5191d-fb34-554f-8d18-d0ba186d6cdb
DOI: 10.1101/2025.03.02.25323192

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