Article

Scalable deep-learning-based inference of time-varying transmission dynamics from outbreak phylogenies

2026-05-10

Abstract excerpt

Infectious disease dynamics can be inferred from pathogen genomic data using phylodynamic methods, but the applicability of many such approaches to large data sets is constrained by computational cost. Recent deep-learning approaches to phylodynamics have improved scalability, yet challenges remain when genetic divergence is limited during fast spreading outbreaks. To address this, we use pathogen-specific models...

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Literature Corpus work: bc21cf7b-e47f-52ef-aa22-f858c70af63f
DOI: 10.64898/2026.05.07.26352673

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