Article

Nanopore sequencing enables highly accurate genotyping and identification of resistance determinants in key nosocomial pathogens

2025-07-28

Abstract excerpt

Whole genome sequencing of bacterial pathogens can positively impact infectious disease management in clinical contexts, both in individual settings and assisting infection prevention efforts. However, logistical issues have often prevented its translation into clinical settings. Oxford Nanopore Technologies (ONT) platforms are flexible, affordable, and now offer accuracy comparable to other sequencing platforms,...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: b653a10f-09ac-5318-a6da-c3ea2c161876
DOI: 10.1101/2025.07.24.25332173

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

Nanopore sequencing enables highly accurate genotyping and identification of resistance determinants in key nosocomial pathogensDOI 10.1101/2025.07.24.25332173Read

Nanopore sequencing enables highly accurate genotyping and identification of resistance determinants in key nosocomial pathogens.Semantic proximity Read

A multicenter study on accuracy and reproducibility of nanopore sequencing-based genotyping of bacterial pathogens.Semantic proximity Read

Real-time Nanopore de novo assembly of ESKAPE pathogens: Implications for antibiotic stewardshipSemantic proximity Read

Evaluation of Oxford Nanopore Technologies workflows for genomic epidemiology of outbreak-associated bacterial isolates in the clinical setting.Semantic proximity Read

Evaluation of Oxford Nanopore Technologies workflows for genomic epidemiology of outbreak‐associated bacterial isolates in the clinical settingSemantic proximity Read

Benchmarking Illumina and Oxford Nanopore Technologies (ONT) sequencing platforms for whole genome sequencing of bacterial genomes and use in clinical microbiologySemantic proximity Read

Accurate and reproducible whole-genome genotyping for bacterial genomic surveillance with Nanopore sequencing data.Semantic proximity Read

Accurate genotyping of three major respiratory bacterial pathogens with ONT R10.4.1 long-read sequencing.Semantic proximity Read

Subtyping Evaluation of Salmonella Enteritidis Using Single Nucleotide Polymorphism and Core Genome Multilocus Sequence Typing with Nanopore Reads.Semantic proximity Read

An evolution of Nanopore next-generation sequencing technology: implications for medical microbiology and public health.Semantic proximity Read

Accurate genotyping of three major respiratory bacterial pathogens with ONT R10.4.1 long-read sequencingSemantic proximity Read

Influence of Sequencing Technology on Pangenome-level Analysis and Detection of Antimicrobial Resistance Genes in ESKAPE PathogensSemantic proximity Read