Article
Subtyping Evaluation of Salmonella Enteritidis Using Single Nucleotide Polymorphism and Core Genome Multilocus Sequence Typing with Nanopore Reads.
Applied and environmental microbiology - 9 Aug 2022
Xian Zhihan, Li Shaoting, Mann David Ames, Huang Yixiao, Xu Feng, Wu Xingwen, Tang Silin, Zhang Guangtao, Stevenson Abigail, Ge Chongtao, Deng Xiangyu
Abstract excerpt
Whole-genome sequencing (WGS) for public health surveillance and epidemiological investigation of foodborne pathogens predominantly relies on sequencing platforms that generate short reads. Continuous improvement of long-read nanopore sequencing, such as Oxford nanopore technologies (ONT), presents a potential for leveraging multiple advantages of the technology in public health and food industry settings,...
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