Article

Representing Genetic Determinants in Bacterial GWAS with Compacted De Bruijn Graphs

2017-03-03

Abstract excerpt

<h4>Motivation</h4> Antimicrobial resistance has become a major worldwide public health concern, calling for a better characterization of existing and novel resistance mechanisms. GWAS methods applied to bacterial genomes have shown encouraging results for new genetic marker discovery. Most existing approaches either look at SNPs obtained by sequence alignment or consider sets of kmers, whose presence in the geno...

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Literature Corpus work: 9cc59298-753a-5396-a25f-c5f268541cd7
DOI: 10.1101/113563

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