Article

BaGPipe: an automated, reproducible, and flexible pipeline for bacterial genome-wide association studies

2025-03-02

Abstract excerpt

Microbial genome-wide association study (GWAS) tools often require manual data processing steps, lack comprehensive workflows, and are limited by scalability issues, thus hindering the exploration of bacterial genetic traits. To address these challenges, we developed BaGPipe, an automated and flexible bacterial GWAS pipeline built using Nextflow and incorporating Pyseer for association analysis. BaGPipe integrates...

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Literature Corpus work: 7da9b6a3-f259-55af-89ae-5bced1a4cbc8
DOI: 10.1101/2025.02.28.640835

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