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Article

BaGPipe: an automated, reproducible, and flexible pipeline for bacterial genome-wide association studies.

BMC microbiology - 27 Mar 2026

Wei Kuangyi Charles, Blane Beth, Toussaint Jacqueline, Reuter Sandra, Toleman Michelle S, Torok Mili Estee, Peacock Sharon J, Harrison Ewan M, Aggarwal Dinesh, Roberts-Sengier William

Abstract excerpt

BACKGROUND: Microbial genome-wide association studies (GWAS) are crucial for linking genetic variation to phenotypic traits in bacteria. However, current tools often involve complex manual processing, limited scalability, and fragmented workflows, which constrain large-scale or routine bacterial GWAS. RESULTS: We developed BaGPipe, an automated and flexible bacterial GWAS pipeline built using Nextflow and...

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Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

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Identifiers

PMID: 41896736
DOI: 10.1186/s12866-026-04909-9
PMCID: PMC13147680

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026.

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