Article

Resistome SNP Calling via Read Colored de Bruijn Graphs

2017-06-26

Abstract excerpt

<h4>Motivation</h4> The resistome, which refers to all of the antimicrobial resistance (AMR) genes in pathogenic and non-pathogenic bacteria, is frequently studied using shotgun metagenomic data [14, 47]. Unfortunately, few existing methods are able to identify single nucleotide polymorphisms (SNPs) within metagenomic data, and to the best of our knowledge, no methods exist to detect SNPs within AMR genes within...

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Literature Corpus work: 94238cfe-7d28-5b41-b490-9c13a39c0455
DOI: 10.1101/156174

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