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Article

prewas: data pre-processing for more informative bacterial GWAS.

Microbial genomics - 1 May 2020

Saund Katie, Lapp Zena, Thiede Stephanie N, Pirani Ali, Snitkin Evan S

Abstract excerpt

While variant identification pipelines are becoming increasingly standardized, less attention has been paid to the pre-processing of variants prior to their use in bacterial genome-wide association studies (bGWAS). Three nuances of variant pre-processing that impact downstream identification of genetic associations include the separation of variants at multiallelic sites, separation of variants in overlapping...

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Identifiers

PMID: 32310745
DOI: 10.1099/mgen.0.000368
PMCID: PMC7371116

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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