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Article

Metagenome SNP calling via read-colored de Bruijn graphs.

Bioinformatics (Oxford, England) - 1 Apr 2021

Alipanahi Bahar, Muggli Martin D, Jundi Musa, Noyes Noelle R, Boucher Christina

Abstract excerpt

MOTIVATION: Metagenomics refers to the study of complex samples containing of genetic contents of multiple individual organisms and, thus, has been used to elucidate the microbiome and resistome of a complex sample. The microbiome refers to all microbial organisms in a sample, and the resistome refers to all of the antimicrobial resistance (AMR) genes in pathogenic and non-pathogenic bacteria. Single-nucleotide...

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PMID: 32049324
DOI: 10.1093/bioinformatics/btaa081
PMCID: PMC8016496

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