Article

Sarand: Exploring Antimicrobial Resistance Gene Neighborhoods in Complex Metagenomic Assembly Graphs

2023-11-01

Abstract excerpt

<h4>ABSTRACT</h4> Antimicrobial resistance (AMR) is a major global challenge to human and animal health. The genomic element (e.g., chromosome, plasmid, and genomic islands) and neighbouring genes associated with an AMR gene play a major role in its function, regulation, evolution, and propensity to undergo lateral gene transfer. Therefore, characterising these genomic contexts is vital to effective AMR surveilla...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 35db03eb-40b6-57d8-9d5e-e08711e65aeb
DOI: 10.1101/2023.10.29.564611

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

Sarand: Exploring Antimicrobial Resistance Gene Neighborhoods in Complex Metagenomic Assembly GraphsDOI 10.1101/2023.10.29.564611Read

Best of Both Worlds? Optimising Graph-Based Antimicrobial Resistance Gene Profiling in Long and Short-Read MetagenomesSemantic proximity Read

Comparative metagenomics using pan-metagenomic graphsSemantic proximity Read

Accurate and fast graph-based pangenome annotation and clustering with ggCallerSemantic proximity Read

Exploring differences across pangenome-graph representations using <i>Escherichia coli</i> O157:H7 as a modelSemantic proximity Read

Exploring neighborhoods in large metagenome assembly graphs using spacegraphcats reveals hidden sequence diversity.Semantic proximity Read

High-resolution metagenome assembly for modern long reads with myloasmSemantic proximity Read

ARIBA: rapid antimicrobial resistance genotyping directly from sequencing readsSemantic proximity Read

NanoARG: A web service for identification of antimicrobial resistance elements from nanopore-derived environmental metagenomesSemantic proximity Read

Knowledge Graph-Based Framework for Detecting Horizontal Gene Transfer Events Driving Antimicrobial ResistanceSemantic proximity Read

The effect of sequencing and assembly on the inference of horizontal gene transfer on chromosomal and plasmid phylogeniesSemantic proximity Read

Exploring high-quality microbial genomes by assembling short-reads with long-range connectivitySemantic proximity Read

Exploring high-quality microbial genomes by assembling short-reads with long-range connectivitySemantic proximity Read