Article

ARIBA: rapid antimicrobial resistance genotyping directly from sequencing reads

2017-03-18

Abstract excerpt

Antimicrobial resistance (AMR) is one of the major threats to human and animal health worldwide, yet few high-throughput tools exist to analyse and predict the resistance of a bacterial isolate from sequencing data. Here we present a new tool, ARIBA, that identifies AMR-associated genes and single nucleotide polymorphisms directly from short reads, and generates detailed and customisable output. The accuracy and a...

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Literature Corpus work: ddcb0e25-ff96-5224-8069-00a42a6cf10e
DOI: 10.1101/118000

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