Article

A comparison of short- and long-read whole genome sequencing for microbial pathogen epidemiology

2025-02-17

Abstract excerpt

Whole genome sequencing provides the highest resolution for characterizing pathogen evolution, epidemiology, and diagnostics. Genome assemblies contain information on the identity and potential phenotypes of a pathogen. Likewise, variant calling can inform on transmission patterns and evolutionary relationships. Recent improvements in Oxford Nanopore long-read sequencing have made its use attractive for genomic ep...

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Literature Corpus work: 70b976e1-1e52-53e1-af7a-43bb9f39a052
DOI: 10.1101/2025.02.17.638699

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