Article

Castanet: a pipeline for rapid analysis of targeted multi-pathogen genomic data

2024-07-02

Abstract excerpt

<h4>Motivation</h4> Target enrichment strategies generate genomic data from multiple pathogens in a single process, greatly improving sensitivity over metagenomic sequencing and enabling cost-effective, high throughput surveillance and clinical applications. However, uptake by research and clinical laboratories is constrained by an absence of computational tools that are specifically designed for the analysis of...

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Literature Corpus work: 55db1dbe-ba67-5ab7-8a6e-febf791d03a3
DOI: 10.1101/2024.06.28.601013

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