Article

Generation of ENSEMBL-based proteogenomics databases boosts the identification of non-canonical peptides

2021-06-09

Abstract excerpt

<h4>Summary</h4> We have implemented the pypgatk package and the pgdb workflow to create proteogenomics databases based on ENSEMBL resources. The tools allow the generation of protein sequences from novel protein-coding transcripts by performing a three-frame translation of pseudogenes, lncRNAs, and other non-canonical transcripts, such as those produced by alternative splicing events. It also includes exonic o...

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Literature Corpus work: 2008cbc0-c6e3-5eae-b1e0-6e16367edd75
DOI: 10.1101/2021.06.08.447496

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