Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Inferring the conformation of RNA base pairs and triples from patterns of sequence variation.

Nucleic acids research - 15 Apr 1997

Gautheret D, Gutell R R

Abstract excerpt

The success of comparative analysis in resolving RNA secondary structure and numerous tertiary interactions relies on the presence of base covariations. Although the majority of base covariations in aligned sequences is associated to Watson-Crick base pairs, many involve non-canonical or restricted base pair exchanges (e.g. only G:C/A:U), reflecting more specific structural constraints. We have developed a...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Base Composition
Share to Computer Simulation
Share to Genetic Variation

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Models, Structural

Share to Nucleic Acid Conformation

Share to RNA, Transfer

Share to Software

Source

Open in PubMed Open full text

Identifiers

PMID: 9092662
DOI: 10.1093/nar/25.8.1559
PMCID: PMC146633

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Inferring the conformation of RNA base pairs and triples from patterns of sequence variation.PMID 9092662Read ↗

Comparison of SIV and HIV-1 Genomic RNA Structures Reveals Impact of Sequence Evolution on Conserved and Non-Conserved Structural MotifsSemantic proximity Read ↗

Phylogenetic and genetic evidence for base-triples in the catalytic domain of group I introns.Semantic proximity Read ↗

Measuring covariation in RNA alignments: physical realism improves information measures.Semantic proximity Read ↗

Incorporating phylogenetic-based covarying mutations into RNAalifold for RNA consensus structure prediction.Semantic proximity Read ↗

Computational detection of abundant long-range nucleotide covariation in Drosophila genomes.Semantic proximity Read ↗

ARTEM: a method for RNA and DNA tertiary motif identification with backbone permutations, and its example application to kink-turn-like motifsSemantic proximity Read ↗

Direct identification of base-paired RNA nucleotides by correlated chemical probing.Semantic proximity Read ↗

Similarity among nucleotide sequences.Semantic proximity Read ↗

Identifying novel sequence variants of RNA 3D motifs.Semantic proximity Read ↗

Predicting RNA secondary structure by the comparative approach: how to select the homologous sequences.Semantic proximity Read ↗

Structure of the pyrimidine-rich internal loop in the poliovirus 3'-UTR: the importance of maintaining pseudo-2-fold symmetry in RNA helices containing two adjacent non-canonical base-pairs.Semantic proximity Read ↗

Finding consensus stable local optimal structures for aligned RNA sequences and its application to discovering riboswitch elements.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.