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Article

Incorporating phylogenetic-based covarying mutations into RNAalifold for RNA consensus structure prediction.

BMC bioinformatics - 27 Apr 2013

Ge Ping, Zhang Shaojie

Abstract excerpt

BACKGROUND: RNAalifold, a popular computational method for RNA consensus structure prediction, incorporates covarying mutations into a thermodynamic model to fold the aligned RNA sequences. When quantifying covariance, it evaluates conserved signals of two aligned columns with base-pairing rules....

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Identifiers

PMID: 23621982
DOI: 10.1186/1471-2105-14-142
PMCID: PMC3691524

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 4 Sept 2026. Prepared record publication-23621982-2026-09-04.2. Manifest publication-graph-cohort-2026-09-04.2.

Source receipt: PubMed via Helena Literature Corpus, retrieved 4 Sept 2026.

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