Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Finding consensus stable local optimal structures for aligned RNA sequences and its application to discovering riboswitch elements.

International journal of bioinformatics research and applications - 1 Jan 2014

Li Yuan, Zhong Cuncong, Zhang Shaojie

Abstract excerpt

Many non-coding RNAs (ncRNAs) can fold into alternate native structures and perform different biological functions. The computational prediction of an ncRNA's alternate native structures can be conducted by analysing the ncRNA's energy landscape. Previously, we have developed a computational approach, RNASLOpt, to predict alternate native structures for a single RNA. In this paper, in order to improve the...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Bacillus subtilis
Share to Genome, Bacterial

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Models, Statistical

Share to Nucleic Acid Conformation

Share to Riboswitch

Share to RNA, Bacterial

Share to Sequence Analysis, RNA

Source

Open in PubMed Open full text

Identifiers

PMID: 24989865
DOI: 10.1504/IJBRA.2014.062997
PMCID: PMC4156590

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Finding consensus stable local optimal structures for aligned RNA sequences and its application to discovering riboswitch elements.PMID 24989865Read ↗

Comparative sequence and structure analysis reveals the conservation and diversity of nucleotide positions and their associated tertiary interactions in the riboswitches.Semantic proximity Read ↗

Computational Discovery of Evolutionary Conserved Enterovirus 71 RNA Secondary StructuresSemantic proximity Read ↗

ARTEM: a method for RNA and DNA tertiary motif identification with backbone permutations, and its example application to kink-turn-like motifsSemantic proximity Read ↗

Incorporating phylogenetic-based covarying mutations into RNAalifold for RNA consensus structure prediction.Semantic proximity Read ↗

LinearTurboFold: Linear-time global prediction of conserved structures for RNA homologs with applications to SARS-CoV-2.Semantic proximity Read ↗

Genome-Wide Identification of Stable RNA Secondary Structures Across Multiple Organisms Using Chemical Probing Data: Insights into Short Structural Motifs and RNA-Targeting TherapeuticsSemantic proximity Read ↗

LinearTurboFold: Linear-Time Global Prediction of Conserved Structures for RNA Homologs with Applications to SARS-CoV-2Semantic proximity Read ↗

Rich RNA Structure Landscapes Revealed by Mutate-and-Map Analysis.Semantic proximity Read ↗

Prediction of consensus structural motifs in a family of coregulated RNA sequences.Semantic proximity Read ↗

Structural basis for diversity in the SAM clan of riboswitches.Semantic proximity Read ↗

Crystal structures of the SAM-III/S(MK) riboswitch reveal the SAM-dependent translation inhibition mechanism.Semantic proximity Read ↗

Comparative Visualization of the RNA Suboptimal Conformational Ensemble In Vivo.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.