Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

A haplotype reference panel and genotype imputation framework for the black soldier fly (Hermetia illucens).

Genomics - 1 Mar 2026

Muchina Peter, Kinyua Johnson, Khamis Fathiya, Tanga Chrysantus M, Satti Maria Altaf, Gebreyesus Grum, Sahana Goutam, Cai Zexi

Abstract excerpt

Low-coverage whole genome sequencing (lcWGS) combined with genotype imputation provides a cost-efficient alternative to high-coverage sequencing for large-scale genotyping. Although widely implemented in human and livestock genomics, this strategy has not yet been systematically optimized for insects of industrial importance. The black soldier fly (BSF, Hermetia illucens) is increasingly used in global waste...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Diptera
Share to Gene Frequency

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Genome, Insect

Share to Genotype

Share to Genotyping Techniques

Share to Haplotypes

Share to Polymorphism, Single Nucleotide

Share to Whole Genome Sequencing

Source

Identifiers

PMID: 41565081
DOI: 10.1016/j.ygeno.2026.111206

Genes

MAF

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 2 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

A haplotype reference panel and genotype imputation framework for the black soldier fly (Hermetia illucens).PMID 41565081Read ↗

Benchmarking imputation accuracy in the presence or absence of a reference panel.Semantic proximity Read ↗

Best practices for genotype imputation from low-coverage sequencing data in natural populations.Semantic proximity Read ↗

Accurate imputation of African cattle genomes using a diverse reference panel.Semantic proximity Read ↗

Imputation of low-coverage sequencing data from 150,119 UK Biobank genomes.Semantic proximity Read ↗

AGIDB: a versatile database for genotype imputation and variant decoding across species.Semantic proximity Read ↗

Imputation in the Wild: Genome-Wide Robustness and Fine-Scale Limitations of Low-Coverage Genomes in Endangered Species.Semantic proximity Read ↗

MetaGLIMPSE: Meta-imputation of low-coverage sequencing data for modern and ancient genomes.Semantic proximity Read ↗

Comprehensive Evaluation of Genotype Imputation Tools for Ultra-low-depth Whole-Genome Sequencing Data.Semantic proximity Read ↗

Fast-GBS v2.0: an analysis toolkit for genotyping-by-sequencing data.Semantic proximity Read ↗

The size and composition of haplotype reference panels impact the accuracy of imputation from low-pass sequencing in cattle.Semantic proximity Read ↗

A cautionary tale of low-pass sequencing and imputation with respect to haplotype accuracy.Semantic proximity Read ↗

A beginner's guide to low-coverage whole genome sequencing for population genomics.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.