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Article

SNP-slice resolves mixed infections: simultaneously unveiling strain haplotypes and linking them to hosts.

Bioinformatics (Oxford, England) - 3 Jun 2024

Ju Nianqiao, Liu Jiawei, He Qixin

Abstract excerpt

MOTIVATION: Multi-strain infection is a common yet under-investigated phenomenon of many pathogens. Currently, biologists analyzing SNP information sometimes have to discard mixed infection samples as many downstream analyses require monogenomic inputs. Such a protocol impedes our understanding of the underlying genetic diversity, co-infection patterns, and genomic relatedness of pathogens. A scalable tool to...

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Identifiers

PMID: 38885409
DOI: 10.1093/bioinformatics/btae344
PMCID: PMC11187496

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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