Article

Distinguishing new from persistent infections at the strain level using longitudinal genotyping data

2025-02-08

Abstract excerpt

<h4>Motivation</h4> Longitudinal pathogen genotyping data from individual hosts can uncover strain-specific infection dynamics and their relationships to disease and intervention, especially in the malaria field. An important use case involves distinguishing newly incident from pre-existing (persistent) strains, but implementation faces statistical challenges relating to individual samples containing multiple str...

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Literature Corpus work: 4d880a2e-25e6-5429-a13e-e9d93017095c
DOI: 10.1101/2025.02.06.636982

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