Article
Towards parsimonious generative modeling of RNA families.
Nucleic acids research - 10 Jun 2024
Calvanese Francesco, Lambert Camille N, Nghe Philippe, Zamponi Francesco, Weigt Martin
Abstract excerpt
Generative probabilistic models emerge as a new paradigm in data-driven, evolution-informed design of biomolecular sequences. This paper introduces a novel approach, called Edge Activation Direct Coupling Analysis (eaDCA), tailored to the characteristics of RNA sequences, with a strong emphasis on simplicity, efficiency, and interpretability. eaDCA explicitly constructs sparse coevolutionary models for RNA...
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