Article
Efficient generative modeling of protein sequences using simple autoregressive models.
Nature communications - 4 Oct 2021
Trinquier Jeanne, Uguzzoni Guido, Pagnani Andrea, Zamponi Francesco, Weigt Martin
Abstract excerpt
Generative models emerge as promising candidates for novel sequence-data driven approaches to protein design, and for the extraction of structural and functional information about proteins deeply hidden in rapidly growing sequence databases. Here we propose simple autoregressive models as highly accurate but computationally efficient generative sequence models. We show that they perform similarly to existing...
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