Article

MINTyper: An outbreak-detection method for accurate and rapid SNP typing of clonal clusters with noisy long reads

2020-05-30

Abstract excerpt

<h4>ABSTRACT</h4> For detection of clonal outbreaks in clinical settings, we present a complete pipeline that generates a SNP-distance matrix from a set of sequencing reads. Importantly, the program is able to handle a separate mix of both short reads from the Illumina sequencing platforms and long reads from Oxford Nanopore Technologies’ (ONT) platforms as input. MINTyper performs automated reference identificat...

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Literature Corpus work: f397da65-d7b0-576a-97f4-6dc2b6d9de9c
DOI: 10.1101/2020.05.28.121251

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