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Article

Identification of highly variable sequence fragments in unmapped reads for rapid bacterial genotyping.

BMC genomics - 29 Dec 2022

Nykrynova Marketa, Barton Vojtech, Bezdicek Matej, Lengerova Martina, Skutkova Helena

Abstract excerpt

BACKGROUND: Bacterial genotyping is a crucial process in outbreak investigation and epidemiological studies. Several typing methods such as pulsed-field gel electrophoresis, multilocus sequence typing (MLST) and whole genome sequencing are currently used in routine clinical practice. However, these methods are costly, time-consuming and have high computational demands. An alternative to these methods is...

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Identifiers

PMID: 36581824
DOI: 10.1186/s12864-022-08550-4
PMCID: PMC9798552

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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