Article

mm2-gb: GPU Accelerated Minimap2 for Long Read DNA Mapping

2024-03-27

Abstract excerpt

Long-read DNA sequencing is becoming increasingly popular for genetic diagnostics. Minimap2 is the state-of-the-art long-read aligner. However, Minimap2’s chaining step is slow on the CPU and takes 40-68% of the time especially for long DNA reads. Prior works in accelerating Minimap2 either lose mapping accuracy, are closed source (and not updated) or deliver inconsistent speedups for longer reads. We introduce m...

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Literature Corpus work: a2d5d6d6-d0c2-5f0c-b56f-14276d0b7e9f
DOI: 10.1101/2024.03.23.586366

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