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elPrep: High-Performance Preparation of Sequence Alignment/Map Files for Variant Calling.

PloS one - 1 Jan 2015

Herzeel Charlotte, Costanza Pascal, Decap Dries, Fostier Jan, Reumers Joke

Abstract excerpt

elPrep is a high-performance tool for preparing sequence alignment/map files for variant calling in sequencing pipelines. It can be used as a replacement for SAMtools and Picard for preparation steps such as filtering, sorting, marking duplicates, reordering contigs, and so on, while producing identical results. What sets elPrep apart is its software architecture that allows executing preparation pipelines by...

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Identifiers

PMID: 26182406
DOI: 10.1371/journal.pone.0132868
PMCID: PMC4504710

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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