Article

hoodscanR: profiling single-cell neighborhoods in spatial transcriptomics data

2024-03-29

Abstract excerpt

Understanding complex cellular niches and neighborhoods have provided new insights into tissue biology. Thus, accurate neighborhood identification is crucial, yet existing methodologies often struggle to detect informative neighborhoods and generate cell-specific neighborhood profiles. To address these limitations, we developed hoodscanR, a Bioconductor package designed for neighborhood identification and downstre...

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Literature Corpus work: 89d3f827-4592-59bf-ac22-db62e546985b
DOI: 10.1101/2024.03.26.586902

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