Article

OCHROdb: a comprehensive, quality checked database of open chromatin regions from sequencing data

2018-12-03

Abstract excerpt

<h4>ABSTRACT</h4> International consortia, including ENCODE, Roadmap Epigenomics, Genomics of Gene Regulation and Blueprint Epigenome have made large-scale datasets of open chromatin regions publicly available. While these datasets are extremely useful for studying mechanisms of gene regulation in disease and cell development, they only identify open chromatin regions in individual samples. A uniform comparison o...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 6b5a9e4b-fce2-5cd9-bfd6-6aa9825f210e
DOI: 10.1101/484840

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

OCHROdb: a comprehensive, quality checked database of open chromatin regions from sequencing dataDOI 10.1101/484840Read

A cell atlas of chromatin accessibility across 25 adult human tissuesSemantic proximity Read

ALTRE: workflow for defining ALTered Regulatory Elements using chromatin accessibility dataSemantic proximity Read

A single-cell atlas of chromatin accessibility in the human genome.Semantic proximity Read

Index and biological spectrum of accessible DNA elements in the human genomeSemantic proximity Read

OpenAnnotate: a web server to annotate the chromatin accessibility of genomic regionsSemantic proximity Read

Screening for functional regulatory variants in open chromatin using GenIE-ATACSemantic proximity Read

Intra- and inter-chromosomal chromatin interactions mediate genetic effects on regulatory networksSemantic proximity Read

The Encyclopedia of DNA ElementsSemantic proximity Read

Quality assessment and refinement of chromatin accessibility data using a sequence-based predictive modelSemantic proximity Read

Graph-based data integration predicts long-range regulatory interactions across the human genomeSemantic proximity Read

Haystack: systematic analysis of the variation of epigenetic states and cell-type specific regulatory elementsSemantic proximity Read

ChIP-Atlas 3.0: a data-mining suite to explore chromosome architecture together with large-scale regulome data.Semantic proximity Read