Article

OpenAnnotate: a web server to annotate the chromatin accessibility of genomic regions

2019-04-03

Abstract excerpt

<h4>ABSTRACT</h4> Chromatin accessibility, as a powerful marker of active DNA regulatory elements, provides valuable information for understanding regulatory mechanisms. The revolution in high-throughput methods has accumulated massive chromatin accessibility profiles in public repositories. Nevertheless, utilization of these data is hampered by cumbersome collection, time-consuming processing, and manual chromat...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 673fac08-284e-541a-ba5b-fc27e9cb68cc
DOI: 10.1101/596627

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

OpenAnnotate: a web server to annotate the chromatin accessibility of genomic regionsDOI 10.1101/596627Read

ALTRE: workflow for defining ALTered Regulatory Elements using chromatin accessibility dataSemantic proximity Read

A single-cell atlas of chromatin accessibility in the human genome.Semantic proximity Read

A cell atlas of chromatin accessibility across 25 adult human tissuesSemantic proximity Read

OCHROdb: a comprehensive, quality checked database of open chromatin regions from sequencing dataSemantic proximity Read

DeepCAGE: Incorporating Transcription Factors in Genome-wide Prediction of Chromatin AccessibilitySemantic proximity Read

Multi-omics analysis of chromatin accessibility and interactions with transcriptome by HiCARSemantic proximity Read

maxATAC: genome-scale transcription-factor binding prediction from ATAC-seq with deep neural networksSemantic proximity Read

Improving chromatin-interaction prediction using single-cell open-chromatin profile and making insight about the cis-regulatory landscape of the human brainSemantic proximity Read

UniversalEPI: robust prediction of cell type-specific and differential chromatin interactions from DNA sequence and chromatin accessibilitySemantic proximity Read

Identifying transcription factor-bound activators and silencers in the chromatin accessible human genome using ATAC-STARR-seqSemantic proximity Read

Comparative evaluation of genomic footprinting algorithms for predicting transcription factor binding sites in single-cell dataSemantic proximity Read

WhichTF is dominant in your open chromatin data?Semantic proximity Read